2004 NAR 数据库！--总目录（上/下）
这个帖子发布于 21 年零 212 天前，其中的信息可能已发生改变或有所发展。
2004 NAR 数据库！
共：282个数据库
目录：
Editorial: EDITORIAL
Nucl. Acids. Res. 2004 32: D1.
[FREE Full Text]
Articles:
Michael Y. Galperin
The Molecular Biology Database Collection: 2004 update
Nucl. Acids. Res. 2004 32: D3-D22.
[Abstract] [FREE Full Text]
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, and David L. Wheeler
GenBank: update
Nucl. Acids. Res. 2004 32: D23-D26.
[Abstract] [FREE Full Text]
Tamara Kulikova, Philippe Aldebert, Nicola Althorpe, Wendy Baker, Kirsty Bates, Paul Browne, Alexandra van den Broek, Guy Cochrane, Karyn Duggan, Ruth Eberhardt, Nadeem Faruque, Maria Garcia-Pastor, Nicola Harte, Carola Kanz, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Renato Mancuso, Michelle McHale, Francesco Nardone, Ville Silventoinen, Peter Stoehr, Guenter Stoesser, Mary Ann Tuli, Katerina Tzouvara, Robert Vaughan, Dan Wu, Weimin Zhu, and Rolf Apweiler
The EMBL Nucleotide Sequence Database
Nucl. Acids. Res. 2004 32: D27-D30.
[Abstract] [FREE Full Text] [Supplementary Material]
S. Miyazaki, H. Sugawara, K. Ikeo, T. Gojobori, and Y. Tateno
DDBJ in the stream of various biological data
Nucl. Acids. Res. 2004 32: D31-D34.
[Abstract] [FREE Full Text]
David L. Wheeler, Deanna M. Church, Ron Edgar, Scott Federhen, Wolfgang Helmberg, Thomas L. Madden, Joan U. Pontius, Gregory D. Schuler, Lynn M. Schriml, Edwin Sequeira, Tugba O. Suzek, Tatiana A. Tatusova, and Lukas Wagner
Database resources of the National Center for Biotechnology Information: update
Nucl. Acids. Res. 2004 32: D35-D40.
[Abstract] [FREE Full Text]
H. W. Mewes, C. Amid, R. Arnold, D. Frishman, U. G黮dener, G. Mannhaupt, M. M黱sterk鰐ter, P. Pagel, N. Strack, V. St黰pflen, J. Warfsmann, and A. Ruepp
MIPS: analysis and annotation of proteins from whole genomes
Nucl. Acids. Res. 2004 32: D41-D44.
[Abstract] [FREE Full Text]
Rapha雔 Leplae, Aline Hebrant, Shoshana J. Wodak, and Ariane Toussaint
ACLAME: A CLAssification of Mobile genetic Elements
Nucl. Acids. Res. 2004 32: D45-D49.
[Abstract] [FREE Full Text]
Jan Paces, Adam Pavl韈ek, Radek Zika, Vladimir V. Kapitonov, Jerzy Jurka, and V醕lav Paces
HERVd: the Human Endogenous RetroViruses Database: update
Nucl. Acids. Res. 2004 32: D50.
[Abstract] [FREE Full Text]
Thierry-Pascal Baum, Nicolas Pasqual, Florence Thuderoz, Vivien Hierle, Denys Chaume, Marie-Paule Lefranc, Evelyne Jouvin-Marche, Patrice-No雔 Marche, and Jacques Demongeot
IMGT/GeneInfo: enhancing V(D)J recombination database accessibility
Nucl. Acids. Res. 2004 32: D51-D54.
[Abstract] [FREE Full Text]
Yogita Mantri and Kelly P. Williams
Islander: a database of integrative islands in prokaryotic genomes, the associated integrases and their DNA site specificities
Nucl. Acids. Res. 2004 32: D55-D58.
[Abstract] [FREE Full Text]
Vivek Gopalan, Tin Wee Tan, Bernett T. K. Lee, and Shoba Ranganathan
Xpro: database of eukaryotic protein-encoding genes
Nucl. Acids. Res. 2004 32: D59-D63.
[Abstract] [FREE Full Text]
T. A. Thanaraj, Stefan Stamm, Francis Clark, Jean-Jack Riethoven, Vincent Le Texier, and Juha Muilu
ASD: the Alternative Splicing Database
Nucl. Acids. Res. 2004 32: D64-D69.
[Abstract] [FREE Full Text]
Heike Pospisil, Alexander Herrmann, Ralf H. Bortfeldt, and Jens G. Reich
EASED: Extended Alternatively Spliced EST Database
Nucl. Acids. Res. 2004 32: D70-D74.
[Abstract] [FREE Full Text]
Yuko Makita, Mitsuteru Nakao, Naotake Ogasawara, and Kenta Nakai
DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics
Nucl. Acids. Res. 2004 32: D75-D77.
[Abstract] [FREE Full Text]
Yutaka Suzuki, Riu Yama***a, Sumio Sugano, and Kenta Nakai
DBTSS, DataBase of Transcriptional Start Sites: progress report 2004
Nucl. Acids. Res. 2004 32: D78-D81.
[Abstract] [FREE Full Text]
Christoph D. Schmid, Viviane Praz, Mauro Delorenzi, Roua飀a P閞ier, and Philipp Bucher
The Eukaryotic Promoter Database EPD: the impact of in silico primer extension
Nucl. Acids. Res. 2004 32: D82-D85.
[Abstract] [FREE Full Text]
Twyla T. Pohar, Hao Sun, and Ramana V. Davuluri
HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development
Nucl. Acids. Res. 2004 32: D86-D90.
[Abstract] [FREE Full Text] [Supplementary Material]
Albin Sandelin, Wynand Alkema, P鋜 Engstr鰉, Wyeth W. Wasserman, and Boris Lenhard
JASPAR: an open-access database for eukaryotic transcription factor binding profiles
Nucl. Acids. Res. 2004 32: D91-D94.
[Abstract] [FREE Full Text]
Jennifer F. Lee, Jay R. Hesselberth, Lauren Ancel Meyers, and Andrew D. Ellington
Aptamer Database
Nucl. Acids. Res. 2004 32: D95-D100.
[Abstract] [FREE Full Text]
Jan Wuyts, Guy Perri鑢e, and Yves Van de Peer
The European ribosomal RNA database
Nucl. Acids. Res. 2004 32: D101-D103.
[Abstract] [FREE Full Text]
Pulcherie Gueneau de No*** and Kelly P. Williams
The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts
Nucl. Acids. Res. 2004 32: D104-D108.
[Abstract] [FREE Full Text] [Supplementary Material]
Sam Griffiths-Jones
The microRNA Registry
Nucl. Acids. Res. 2004 32: D109-D111.
[Abstract] [FREE Full Text]
Cathy H. Wu, Anastasia Nikolskaya, Hongzhan Huang, Lai-Su L. Yeh, Darren A. Natale, C. R. Vinayaka, Zhang-Zhi Hu, Raja Mazumder, Sandeep Kumar, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, Leslie Arminski, Yongxing Chen, Jian Zhang, Jorge Louie Cardenas, Sehee Chung, Jorge Castro-Alvear, Georgi Dinkov, and Winona C. Barker
PIRSF: family classification system at the Protein Information Resource
Nucl. Acids. Res. 2004 32: D112-D114.
[Abstract] [FREE Full Text]
Rolf Apweiler, Amos Bairoch, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria J. Martin, Darren A. Natale, Claire O’Donovan, Nicole Redaschi, and Lai-Su L. Yeh
UniProt: the Universal Protein knowledgebase
Nucl. Acids. Res. 2004 32: D115-D119.
[Abstract] [FREE Full Text]
K. Abdulla Bava, M. Michael Gromiha, Hatsuho Uedaira, Koji Kitajima, and Akinori Sarai
ProTherm, version 4.0: thermodynamic database for proteins and mutants
Nucl. Acids. Res. 2004 32: D120-D121.
[Abstract] [FREE Full Text]
Tao Guo, Sujun Hua, Xinglai Ji, and Zhirong Sun
DBSubLoc: database of protein subcellular localization
Nucl. Acids. Res. 2004 32: D122-D124.
[Abstract] [FREE Full Text]
S. A. Fernando, P. Selvarani, Soma Das, Ch. Kiran Kumar, Sukanta Mondal, S. Ramakumar, and K. Sekar
THGS: a web-based database of Transmembrane Helices in Genome Sequences
Nucl. Acids. Res. 2004 32: D125-D128.
[Abstract] [FREE Full Text]
Craig T. Porter, Gail J. Bartlett, and Janet M. Thornton
The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data
Nucl. Acids. Res. 2004 32: D129-D133.
[Abstract] [FREE Full Text]
Nicolas Hulo, Christian J. A. Sigrist, Virginie Le Saux, Petra S. Langendijk-Genevaux, Lorenza Bordoli, Alexandre Gattiker, Edouard De Castro, Philipp Bucher, and Amos Bairoch
Recent improvements to the PROSITE database
Nucl. Acids. Res. 2004 32: D134-D137.
[Abstract] [FREE Full Text]
Alex Bateman, Lachlan Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, and Sean R. Eddy
The Pfam protein families database
Nucl. Acids. Res. 2004 32: D138-D141.
[Abstract] [FREE Full Text]
Ivica Letunic, Richard R. Copley, Steffen Schmidt, Francesca D. Ciccarelli, Tobias Doerks, J鰎g Schultz, Chris P. Ponting, and Peer Bork
SMART 4.0: towards genomic data integration
Nucl. Acids. Res. 2004 32: D142-D144.
[Abstract] [FREE Full Text]
Thierry Hotelier, Ludovic Renault, Xavier Cousin, Vincent Negre, Pascale Marchot, and Arnaud Chatonnet
ESTHER, the database of the /ß-hydrolase fold superfamily of proteins
Nucl. Acids. Res. 2004 32: D145-D147.
[Abstract] [FREE Full Text] [Supplementary Material]
David A. Lee, Sandrine Fefeu, Adrian A. Edo-Ukeh, Christine A. Orengo, and Christine Slingsby
EyeSite: a semi-automated database of protein families in the eye
Nucl. Acids. Res. 2004 32: D148-D152.
[Abstract] [FREE Full Text]
A. Krupa, K. R. Abhinandan, and N. Srinivasan
KinG: a database of protein kinases in genomes
Nucl. Acids. Res. 2004 32: D153-D155.
[Abstract] [FREE Full Text]
Jean-Christophe Gelly, J閞鬽e Gracy, Quentin Kaas, Dung Le-Nguyen, Annie Heitz, and Laurent Chiche
The KNOTTIN website and database: a new information system dedicated to the knottin scaffold
Nucl. Acids. Res. 2004 32: D156-D159.
[Abstract] [FREE Full Text]
Neil D. Rawlings, Dominic P. Tolle, and Alan J. Barrett
MEROPS: the peptidase database
Nucl. Acids. Res. 2004 32: D160-D164.
[Abstract] [FREE Full Text]
David Ruau, Jorge Duarte, Tarik Ourjdal, Guy Perri鑢e, Vincent Laudet, and Marc Robinson-Rechavi
Update of NUREBASE: nuclear hormone receptor functional genomics
Nucl. Acids. Res. 2004 32: D165-D167.
[Abstract] [FREE Full Text]
Akihiro Nakao, Maki Yoshihama, and Naoya Kenmochi
RPG: the Ribosomal Protein Gene database
Nucl. Acids. Res. 2004 32: D168-D170.
[Abstract] [FREE Full Text]
Antoni Hermoso, Daniel Aguilar, Francesc X. Aviles, and Enrique Querol
TrSDB: a proteome database of transcription factors
Nucl. Acids. Res. 2004 32: D171-D173.
[Abstract] [FREE Full Text]
Michael M. Hoffman, Maksim A. Khrapov, J. Colin Cox, Jianchao Yao, Lingnan Tong, and Andrew D. Ellington
AANT: the Amino Acid–Nucleotide Interaction Database
Nucl. Acids. Res. 2004 32: D174-D181.
[Abstract] [FREE Full Text]
Makio Tamura, Donna K. Hendrix, Peter S. Klosterman, Nancy R. B. Schimmelman, Steven E. Brenner, and Stephen R. Holbrook
SCOR: Structural Classification of RNA, version 2.0
Nucl. Acids. Res. 2004 32: D182-D184.
[Abstract] [FREE Full Text]
Jordi Espadaler, Narcis Fernandez-Fuentes, Antonio Hermoso, Enrique Querol, Francesc X. Aviles, Michael J. E. Sternberg, and Baldomero Oliva
ArchDB: automated protein loop classification as a tool for structural genomics
Nucl. Acids. Res. 2004 32: D185-D188.
[Abstract] [FREE Full Text] [Supplementary Material]
John-Marc Chandonia, Gary Hon, Nigel S. Walker, Loredana Lo Conte, Patrice Koehl, Michael Levitt, and Steven E. Brenner
The ASTRAL Compendium in 2004
Nucl. Acids. Res. 2004 32: D189-D192.
[Abstract] [FREE Full Text]
R. Aroul Selvam and Rajkumar Sasidharan
DomIns: a web resource for domain insertions in known protein structures
Nucl. Acids. Res. 2004 32: D193-D195.
[Abstract] [FREE Full Text]
Liam J. McGuffin, Stefano A. Street, Kevin Bryson, S鴕en-Aksel S鴕ensen, and David T. Jones
The Genomic Threading Database: a comprehensive resource for structural annotations of the genomes from key organisms
Nucl. Acids. Res. 2004 32: D196-D199.
[Abstract] [FREE Full Text]
A. Vinayagam, G. Pugalenthi, R. Rajesh, and R. Sowdhamini
DSDBASE: a consortium of native and modelled disulphide bonds in proteins
Nucl. Acids. Res. 2004 32: D200-D202.
[Abstract] [FREE Full Text]
Lucy A. Stebbings and Kenji Mizuguchi
HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database
Nucl. Acids. Res. 2004 32: D203-D207.
[Abstract] [FREE Full Text]
Quentin Kaas, Manuel Ruiz, and Marie-Paule Lefranc
IMGT/3Dstructure-DB and IMGT/StructuralQuery, a database and a tool for immunoglobulin, T cell receptor and MHC structural data
Nucl. Acids. Res. 2004 32: D208-D210.
[Abstract] [FREE Full Text]
A. Golovin, T. J. Oldfield, J. G. Tate, S. Velankar, G. J. Barton, H. Boutselakis, D. Dimitropoulos, J. Fillon, A. Hussain, J. M. C. Ionides, M. John, P. A. Keller, E. Krissinel, P. McNeil, A. Naim, R. Newman, A. Pajon, J. Pineda, A. Rachedi, J. Copeland, A. Sitnov, S. Sobhany, A. Suarez-Uruena, G. J. Swaminathan, M. Tagari, S. Tromm, W. Vranken, and K. Henrick
E-MSD: an integrated data resource for bioinformatics
Nucl. Acids. Res. 2004 32: D211-D216.
[Abstract] [FREE Full Text]
Ursula Pieper, Narayanan Eswar, Hannes Braberg, M. S. Madhusudhan, Fred P. Davis, Ashley C. Stuart, Nebojsa Mirkovic, Andrea Rossi, Marc A. Marti-Renom, Andras Fiser, Ben Webb, Daniel Greenblatt, Conrad C. Huang, Thomas E. Ferrin, and Andrej Sali
MODBASE, a database of annotated comparative protein structure models, and associated resources
Nucl. Acids. Res. 2004 32: D217-D222.
[Abstract] [FREE Full Text]
Philip E. Bourne, Kenneth J. Addess, Wolfgang F. Bluhm, Li Chen, Nita Deshpande, Zukang Feng, Ward Fleri, Rachel Green, Jeffrey C. Merino-Ott, Wayne Townsend-Merino, Helge Weissig, John Westbrook, and Helen M. Berman
The distribution and query systems of the RCSB Protein Data Bank
Nucl. Acids. Res. 2004 32: D223-D225.
[Abstract] [FREE Full Text]
Antonina Andreeva, Dave Howorth, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, and Alexey G. Murzin
SCOP database in 2004: refinements integrate structure and sequence family data
Nucl. Acids. Res. 2004 32: D226-D229.
[Abstract] [FREE Full Text]
J黵gen Kopp and Torsten Schwede
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models
Nucl. Acids. Res. 2004 32: D230-D234.
[Abstract] [FREE Full Text]
Martin Madera, Christine Vogel, Sarah K. Kummerfeld, Cyrus Chothia, and Julian Gough
The SUPERFAMILY database in 2004: additions and improvements
Nucl. Acids. Res. 2004 32: D235-D239.
[Abstract] [FREE Full Text]
Fabrizio Ferr? Gabriele Ausiello, Andreas Zanzoni, and Manuela Helmer-Citterich
SURFACE: a database of protein surface regions for functional annotation
Nucl. Acids. Res. 2004 32: D240-D244.
[Abstract] [FREE Full Text]
Keiran Fleming, Arne M黮ler, Robert M. MacCallum, and Michael J. E. Sternberg
3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes
Nucl. Acids. Res. 2004 32: D245-D250.
[Abstract] [FREE Full Text]
Ioannis Michalopoulos, Gilleain M. Torrance, David R. Gilbert, and David R. Westhead
TOPS: an enhanced database of protein structural topology
Nucl. Acids. Res. 2004 32: D251-D254.
[Abstract] [FREE Full Text] [Supplementary Material]
Hester M. Wain, Michael J. Lush, Fabrice Ducluzeau, Varsha K. Khodiyar, and Sue Povey
Genew: the Human Gene Nomenclature Database, 2004 updates
Nucl. Acids. Res. 2004 32: D255-D257.
[Abstract] [FREE Full Text]
Gene Ontology Consortium
The Gene Ontology (GO) database and informatics resource
Nucl. Acids. Res. 2004 32: D258-D261.
[Abstract] [FREE Full Text] [Supplementary Material]
Evelyn Camon, Michele Magrane, Daniel Barrell, Vivian Lee, Emily Dimmer, John Maslen, David Binns, Nicola Harte, Rodrigo Lopez, and Rolf Apweiler
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology
Nucl. Acids. Res. 2004 32: D262-D266.
[Abstract] [FREE Full Text]
Olivier Bodenreider
The Unified Medical Language System (UMLS): integrating biomedical terminology
Nucl. Acids. Res. 2004 32: D267-D270.
[Abstract] [FREE Full Text]
Ren Zhang, Hong-Yu Ou, and Chun-Ting Zhang
DEG: a database of essential genes
Nucl. Acids. Res. 2004 32: D271-D272.
[Abstract] [FREE Full Text]
Karsten Suhre and Jean-Michel Claverie
FusionDB: a database for in-depth analysis of prokaryotic gene fusion events
Nucl. Acids. Res. 2004 32: D273-D276.
[Abstract] [FREE Full Text]
Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Yasushi Okuno, and Masahiro Hattori
The KEGG resource for deciphering the genome
Nucl. Acids. Res. 2004 32: D277-D280.
[Abstract] [FREE Full Text]
Naomi Siew, Yaniv Azaria, and Daniel Fischer
The ORFanage: an ORFan database
Nucl. Acids. Res. 2004 32: D281-D283.
[Abstract] [FREE Full Text]
Qinghu Ren, Katherine H. Kang, and Ian T. Paulsen
TransportDB: a relational database of cellular membrane transport systems
Nucl. Acids. Res. 2004 32: D284-D288.
[Abstract] [FREE Full Text]
Urmila Kulkarni-Kale, Shriram Bhosle, G. Sunitha Manjari, and A. S. Kolaskar
VirGen: a comprehensive viral genome resource
Nucl. Acids. Res. 2004 32: D289-D292.
[Abstract] [FREE Full Text]
Shan Sundararaj, Anchi Guo, Bahram Habibi-Nazhad, Melania Rouani, Paul Stothard, Michael Ellison, and David S. Wishart
The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli
Nucl. Acids. Res. 2004 32: D293-D295.
[Abstract] [FREE Full Text]
Roy R. Chaudhuri, Arshad M. Khan, and Mark J. Pallen
coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics
Nucl. Acids. Res. 2004 32: D296-D299.
[Abstract] [FREE Full Text] [Supplementary Material]
Margrethe H. Serres, Sulip Goswami, and Monica Riley
GenProtEC: an updated and improved analysis of functions of Escherichia coli K-12 proteins
Nucl. Acids. Res. 2004 32: D300-D302.
[Abstract] [FREE Full Text]
Heladia Salgado, Socorro Gama-Castro, Agustino Mart韓ez-Antonio, Edgar D韆z-Peredo, Fabiola S醤chez-Solano, Mart韓 Peralta-Gil, Delfino Garcia-Alonso, Ver髇ica Jim閚ez-Jacinto, Alberto Santos-Zavaleta, C閟ar Bonavides-Mart韓ez, and Julio Collado-Vides
RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12
Nucl. Acids. Res. 2004 32: D303-D306.
[Abstract] [FREE Full Text]
共：282个数据库
目录：
Editorial: EDITORIAL
Nucl. Acids. Res. 2004 32: D1.
[FREE Full Text]
Articles:
Michael Y. Galperin
The Molecular Biology Database Collection: 2004 update
Nucl. Acids. Res. 2004 32: D3-D22.
[Abstract] [FREE Full Text]
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, and David L. Wheeler
GenBank: update
Nucl. Acids. Res. 2004 32: D23-D26.
[Abstract] [FREE Full Text]
Tamara Kulikova, Philippe Aldebert, Nicola Althorpe, Wendy Baker, Kirsty Bates, Paul Browne, Alexandra van den Broek, Guy Cochrane, Karyn Duggan, Ruth Eberhardt, Nadeem Faruque, Maria Garcia-Pastor, Nicola Harte, Carola Kanz, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Renato Mancuso, Michelle McHale, Francesco Nardone, Ville Silventoinen, Peter Stoehr, Guenter Stoesser, Mary Ann Tuli, Katerina Tzouvara, Robert Vaughan, Dan Wu, Weimin Zhu, and Rolf Apweiler
The EMBL Nucleotide Sequence Database
Nucl. Acids. Res. 2004 32: D27-D30.
[Abstract] [FREE Full Text] [Supplementary Material]
S. Miyazaki, H. Sugawara, K. Ikeo, T. Gojobori, and Y. Tateno
DDBJ in the stream of various biological data
Nucl. Acids. Res. 2004 32: D31-D34.
[Abstract] [FREE Full Text]
David L. Wheeler, Deanna M. Church, Ron Edgar, Scott Federhen, Wolfgang Helmberg, Thomas L. Madden, Joan U. Pontius, Gregory D. Schuler, Lynn M. Schriml, Edwin Sequeira, Tugba O. Suzek, Tatiana A. Tatusova, and Lukas Wagner
Database resources of the National Center for Biotechnology Information: update
Nucl. Acids. Res. 2004 32: D35-D40.
[Abstract] [FREE Full Text]
H. W. Mewes, C. Amid, R. Arnold, D. Frishman, U. G黮dener, G. Mannhaupt, M. M黱sterk鰐ter, P. Pagel, N. Strack, V. St黰pflen, J. Warfsmann, and A. Ruepp
MIPS: analysis and annotation of proteins from whole genomes
Nucl. Acids. Res. 2004 32: D41-D44.
[Abstract] [FREE Full Text]
Rapha雔 Leplae, Aline Hebrant, Shoshana J. Wodak, and Ariane Toussaint
ACLAME: A CLAssification of Mobile genetic Elements
Nucl. Acids. Res. 2004 32: D45-D49.
[Abstract] [FREE Full Text]
Jan Paces, Adam Pavl韈ek, Radek Zika, Vladimir V. Kapitonov, Jerzy Jurka, and V醕lav Paces
HERVd: the Human Endogenous RetroViruses Database: update
Nucl. Acids. Res. 2004 32: D50.
[Abstract] [FREE Full Text]
Thierry-Pascal Baum, Nicolas Pasqual, Florence Thuderoz, Vivien Hierle, Denys Chaume, Marie-Paule Lefranc, Evelyne Jouvin-Marche, Patrice-No雔 Marche, and Jacques Demongeot
IMGT/GeneInfo: enhancing V(D)J recombination database accessibility
Nucl. Acids. Res. 2004 32: D51-D54.
[Abstract] [FREE Full Text]
Yogita Mantri and Kelly P. Williams
Islander: a database of integrative islands in prokaryotic genomes, the associated integrases and their DNA site specificities
Nucl. Acids. Res. 2004 32: D55-D58.
[Abstract] [FREE Full Text]
Vivek Gopalan, Tin Wee Tan, Bernett T. K. Lee, and Shoba Ranganathan
Xpro: database of eukaryotic protein-encoding genes
Nucl. Acids. Res. 2004 32: D59-D63.
[Abstract] [FREE Full Text]
T. A. Thanaraj, Stefan Stamm, Francis Clark, Jean-Jack Riethoven, Vincent Le Texier, and Juha Muilu
ASD: the Alternative Splicing Database
Nucl. Acids. Res. 2004 32: D64-D69.
[Abstract] [FREE Full Text]
Heike Pospisil, Alexander Herrmann, Ralf H. Bortfeldt, and Jens G. Reich
EASED: Extended Alternatively Spliced EST Database
Nucl. Acids. Res. 2004 32: D70-D74.
[Abstract] [FREE Full Text]
Yuko Makita, Mitsuteru Nakao, Naotake Ogasawara, and Kenta Nakai
DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics
Nucl. Acids. Res. 2004 32: D75-D77.
[Abstract] [FREE Full Text]
Yutaka Suzuki, Riu Yama***a, Sumio Sugano, and Kenta Nakai
DBTSS, DataBase of Transcriptional Start Sites: progress report 2004
Nucl. Acids. Res. 2004 32: D78-D81.
[Abstract] [FREE Full Text]
Christoph D. Schmid, Viviane Praz, Mauro Delorenzi, Roua飀a P閞ier, and Philipp Bucher
The Eukaryotic Promoter Database EPD: the impact of in silico primer extension
Nucl. Acids. Res. 2004 32: D82-D85.
[Abstract] [FREE Full Text]
Twyla T. Pohar, Hao Sun, and Ramana V. Davuluri
HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development
Nucl. Acids. Res. 2004 32: D86-D90.
[Abstract] [FREE Full Text] [Supplementary Material]
Albin Sandelin, Wynand Alkema, P鋜 Engstr鰉, Wyeth W. Wasserman, and Boris Lenhard
JASPAR: an open-access database for eukaryotic transcription factor binding profiles
Nucl. Acids. Res. 2004 32: D91-D94.
[Abstract] [FREE Full Text]
Jennifer F. Lee, Jay R. Hesselberth, Lauren Ancel Meyers, and Andrew D. Ellington
Aptamer Database
Nucl. Acids. Res. 2004 32: D95-D100.
[Abstract] [FREE Full Text]
Jan Wuyts, Guy Perri鑢e, and Yves Van de Peer
The European ribosomal RNA database
Nucl. Acids. Res. 2004 32: D101-D103.
[Abstract] [FREE Full Text]
Pulcherie Gueneau de No*** and Kelly P. Williams
The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts
Nucl. Acids. Res. 2004 32: D104-D108.
[Abstract] [FREE Full Text] [Supplementary Material]
Sam Griffiths-Jones
The microRNA Registry
Nucl. Acids. Res. 2004 32: D109-D111.
[Abstract] [FREE Full Text]
Cathy H. Wu, Anastasia Nikolskaya, Hongzhan Huang, Lai-Su L. Yeh, Darren A. Natale, C. R. Vinayaka, Zhang-Zhi Hu, Raja Mazumder, Sandeep Kumar, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, Leslie Arminski, Yongxing Chen, Jian Zhang, Jorge Louie Cardenas, Sehee Chung, Jorge Castro-Alvear, Georgi Dinkov, and Winona C. Barker
PIRSF: family classification system at the Protein Information Resource
Nucl. Acids. Res. 2004 32: D112-D114.
[Abstract] [FREE Full Text]
Rolf Apweiler, Amos Bairoch, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria J. Martin, Darren A. Natale, Claire O’Donovan, Nicole Redaschi, and Lai-Su L. Yeh
UniProt: the Universal Protein knowledgebase
Nucl. Acids. Res. 2004 32: D115-D119.
[Abstract] [FREE Full Text]
K. Abdulla Bava, M. Michael Gromiha, Hatsuho Uedaira, Koji Kitajima, and Akinori Sarai
ProTherm, version 4.0: thermodynamic database for proteins and mutants
Nucl. Acids. Res. 2004 32: D120-D121.
[Abstract] [FREE Full Text]
Tao Guo, Sujun Hua, Xinglai Ji, and Zhirong Sun
DBSubLoc: database of protein subcellular localization
Nucl. Acids. Res. 2004 32: D122-D124.
[Abstract] [FREE Full Text]
S. A. Fernando, P. Selvarani, Soma Das, Ch. Kiran Kumar, Sukanta Mondal, S. Ramakumar, and K. Sekar
THGS: a web-based database of Transmembrane Helices in Genome Sequences
Nucl. Acids. Res. 2004 32: D125-D128.
[Abstract] [FREE Full Text]
Craig T. Porter, Gail J. Bartlett, and Janet M. Thornton
The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data
Nucl. Acids. Res. 2004 32: D129-D133.
[Abstract] [FREE Full Text]
Nicolas Hulo, Christian J. A. Sigrist, Virginie Le Saux, Petra S. Langendijk-Genevaux, Lorenza Bordoli, Alexandre Gattiker, Edouard De Castro, Philipp Bucher, and Amos Bairoch
Recent improvements to the PROSITE database
Nucl. Acids. Res. 2004 32: D134-D137.
[Abstract] [FREE Full Text]
Alex Bateman, Lachlan Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, and Sean R. Eddy
The Pfam protein families database
Nucl. Acids. Res. 2004 32: D138-D141.
[Abstract] [FREE Full Text]
Ivica Letunic, Richard R. Copley, Steffen Schmidt, Francesca D. Ciccarelli, Tobias Doerks, J鰎g Schultz, Chris P. Ponting, and Peer Bork
SMART 4.0: towards genomic data integration
Nucl. Acids. Res. 2004 32: D142-D144.
[Abstract] [FREE Full Text]
Thierry Hotelier, Ludovic Renault, Xavier Cousin, Vincent Negre, Pascale Marchot, and Arnaud Chatonnet
ESTHER, the database of the /ß-hydrolase fold superfamily of proteins
Nucl. Acids. Res. 2004 32: D145-D147.
[Abstract] [FREE Full Text] [Supplementary Material]
David A. Lee, Sandrine Fefeu, Adrian A. Edo-Ukeh, Christine A. Orengo, and Christine Slingsby
EyeSite: a semi-automated database of protein families in the eye
Nucl. Acids. Res. 2004 32: D148-D152.
[Abstract] [FREE Full Text]
A. Krupa, K. R. Abhinandan, and N. Srinivasan
KinG: a database of protein kinases in genomes
Nucl. Acids. Res. 2004 32: D153-D155.
[Abstract] [FREE Full Text]
Jean-Christophe Gelly, J閞鬽e Gracy, Quentin Kaas, Dung Le-Nguyen, Annie Heitz, and Laurent Chiche
The KNOTTIN website and database: a new information system dedicated to the knottin scaffold
Nucl. Acids. Res. 2004 32: D156-D159.
[Abstract] [FREE Full Text]
Neil D. Rawlings, Dominic P. Tolle, and Alan J. Barrett
MEROPS: the peptidase database
Nucl. Acids. Res. 2004 32: D160-D164.
[Abstract] [FREE Full Text]
David Ruau, Jorge Duarte, Tarik Ourjdal, Guy Perri鑢e, Vincent Laudet, and Marc Robinson-Rechavi
Update of NUREBASE: nuclear hormone receptor functional genomics
Nucl. Acids. Res. 2004 32: D165-D167.
[Abstract] [FREE Full Text]
Akihiro Nakao, Maki Yoshihama, and Naoya Kenmochi
RPG: the Ribosomal Protein Gene database
Nucl. Acids. Res. 2004 32: D168-D170.
[Abstract] [FREE Full Text]
Antoni Hermoso, Daniel Aguilar, Francesc X. Aviles, and Enrique Querol
TrSDB: a proteome database of transcription factors
Nucl. Acids. Res. 2004 32: D171-D173.
[Abstract] [FREE Full Text]
Michael M. Hoffman, Maksim A. Khrapov, J. Colin Cox, Jianchao Yao, Lingnan Tong, and Andrew D. Ellington
AANT: the Amino Acid–Nucleotide Interaction Database
Nucl. Acids. Res. 2004 32: D174-D181.
[Abstract] [FREE Full Text]
Makio Tamura, Donna K. Hendrix, Peter S. Klosterman, Nancy R. B. Schimmelman, Steven E. Brenner, and Stephen R. Holbrook
SCOR: Structural Classification of RNA, version 2.0
Nucl. Acids. Res. 2004 32: D182-D184.
[Abstract] [FREE Full Text]
Jordi Espadaler, Narcis Fernandez-Fuentes, Antonio Hermoso, Enrique Querol, Francesc X. Aviles, Michael J. E. Sternberg, and Baldomero Oliva
ArchDB: automated protein loop classification as a tool for structural genomics
Nucl. Acids. Res. 2004 32: D185-D188.
[Abstract] [FREE Full Text] [Supplementary Material]
John-Marc Chandonia, Gary Hon, Nigel S. Walker, Loredana Lo Conte, Patrice Koehl, Michael Levitt, and Steven E. Brenner
The ASTRAL Compendium in 2004
Nucl. Acids. Res. 2004 32: D189-D192.
[Abstract] [FREE Full Text]
R. Aroul Selvam and Rajkumar Sasidharan
DomIns: a web resource for domain insertions in known protein structures
Nucl. Acids. Res. 2004 32: D193-D195.
[Abstract] [FREE Full Text]
Liam J. McGuffin, Stefano A. Street, Kevin Bryson, S鴕en-Aksel S鴕ensen, and David T. Jones
The Genomic Threading Database: a comprehensive resource for structural annotations of the genomes from key organisms
Nucl. Acids. Res. 2004 32: D196-D199.
[Abstract] [FREE Full Text]
A. Vinayagam, G. Pugalenthi, R. Rajesh, and R. Sowdhamini
DSDBASE: a consortium of native and modelled disulphide bonds in proteins
Nucl. Acids. Res. 2004 32: D200-D202.
[Abstract] [FREE Full Text]
Lucy A. Stebbings and Kenji Mizuguchi
HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database
Nucl. Acids. Res. 2004 32: D203-D207.
[Abstract] [FREE Full Text]
Quentin Kaas, Manuel Ruiz, and Marie-Paule Lefranc
IMGT/3Dstructure-DB and IMGT/StructuralQuery, a database and a tool for immunoglobulin, T cell receptor and MHC structural data
Nucl. Acids. Res. 2004 32: D208-D210.
[Abstract] [FREE Full Text]
A. Golovin, T. J. Oldfield, J. G. Tate, S. Velankar, G. J. Barton, H. Boutselakis, D. Dimitropoulos, J. Fillon, A. Hussain, J. M. C. Ionides, M. John, P. A. Keller, E. Krissinel, P. McNeil, A. Naim, R. Newman, A. Pajon, J. Pineda, A. Rachedi, J. Copeland, A. Sitnov, S. Sobhany, A. Suarez-Uruena, G. J. Swaminathan, M. Tagari, S. Tromm, W. Vranken, and K. Henrick
E-MSD: an integrated data resource for bioinformatics
Nucl. Acids. Res. 2004 32: D211-D216.
[Abstract] [FREE Full Text]
Ursula Pieper, Narayanan Eswar, Hannes Braberg, M. S. Madhusudhan, Fred P. Davis, Ashley C. Stuart, Nebojsa Mirkovic, Andrea Rossi, Marc A. Marti-Renom, Andras Fiser, Ben Webb, Daniel Greenblatt, Conrad C. Huang, Thomas E. Ferrin, and Andrej Sali
MODBASE, a database of annotated comparative protein structure models, and associated resources
Nucl. Acids. Res. 2004 32: D217-D222.
[Abstract] [FREE Full Text]
Philip E. Bourne, Kenneth J. Addess, Wolfgang F. Bluhm, Li Chen, Nita Deshpande, Zukang Feng, Ward Fleri, Rachel Green, Jeffrey C. Merino-Ott, Wayne Townsend-Merino, Helge Weissig, John Westbrook, and Helen M. Berman
The distribution and query systems of the RCSB Protein Data Bank
Nucl. Acids. Res. 2004 32: D223-D225.
[Abstract] [FREE Full Text]
Antonina Andreeva, Dave Howorth, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, and Alexey G. Murzin
SCOP database in 2004: refinements integrate structure and sequence family data
Nucl. Acids. Res. 2004 32: D226-D229.
[Abstract] [FREE Full Text]
J黵gen Kopp and Torsten Schwede
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models
Nucl. Acids. Res. 2004 32: D230-D234.
[Abstract] [FREE Full Text]
Martin Madera, Christine Vogel, Sarah K. Kummerfeld, Cyrus Chothia, and Julian Gough
The SUPERFAMILY database in 2004: additions and improvements
Nucl. Acids. Res. 2004 32: D235-D239.
[Abstract] [FREE Full Text]
Fabrizio Ferr? Gabriele Ausiello, Andreas Zanzoni, and Manuela Helmer-Citterich
SURFACE: a database of protein surface regions for functional annotation
Nucl. Acids. Res. 2004 32: D240-D244.
[Abstract] [FREE Full Text]
Keiran Fleming, Arne M黮ler, Robert M. MacCallum, and Michael J. E. Sternberg
3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes
Nucl. Acids. Res. 2004 32: D245-D250.
[Abstract] [FREE Full Text]
Ioannis Michalopoulos, Gilleain M. Torrance, David R. Gilbert, and David R. Westhead
TOPS: an enhanced database of protein structural topology
Nucl. Acids. Res. 2004 32: D251-D254.
[Abstract] [FREE Full Text] [Supplementary Material]
Hester M. Wain, Michael J. Lush, Fabrice Ducluzeau, Varsha K. Khodiyar, and Sue Povey
Genew: the Human Gene Nomenclature Database, 2004 updates
Nucl. Acids. Res. 2004 32: D255-D257.
[Abstract] [FREE Full Text]
Gene Ontology Consortium
The Gene Ontology (GO) database and informatics resource
Nucl. Acids. Res. 2004 32: D258-D261.
[Abstract] [FREE Full Text] [Supplementary Material]
Evelyn Camon, Michele Magrane, Daniel Barrell, Vivian Lee, Emily Dimmer, John Maslen, David Binns, Nicola Harte, Rodrigo Lopez, and Rolf Apweiler
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology
Nucl. Acids. Res. 2004 32: D262-D266.
[Abstract] [FREE Full Text]
Olivier Bodenreider
The Unified Medical Language System (UMLS): integrating biomedical terminology
Nucl. Acids. Res. 2004 32: D267-D270.
[Abstract] [FREE Full Text]
Ren Zhang, Hong-Yu Ou, and Chun-Ting Zhang
DEG: a database of essential genes
Nucl. Acids. Res. 2004 32: D271-D272.
[Abstract] [FREE Full Text]
Karsten Suhre and Jean-Michel Claverie
FusionDB: a database for in-depth analysis of prokaryotic gene fusion events
Nucl. Acids. Res. 2004 32: D273-D276.
[Abstract] [FREE Full Text]
Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Yasushi Okuno, and Masahiro Hattori
The KEGG resource for deciphering the genome
Nucl. Acids. Res. 2004 32: D277-D280.
[Abstract] [FREE Full Text]
Naomi Siew, Yaniv Azaria, and Daniel Fischer
The ORFanage: an ORFan database
Nucl. Acids. Res. 2004 32: D281-D283.
[Abstract] [FREE Full Text]
Qinghu Ren, Katherine H. Kang, and Ian T. Paulsen
TransportDB: a relational database of cellular membrane transport systems
Nucl. Acids. Res. 2004 32: D284-D288.
[Abstract] [FREE Full Text]
Urmila Kulkarni-Kale, Shriram Bhosle, G. Sunitha Manjari, and A. S. Kolaskar
VirGen: a comprehensive viral genome resource
Nucl. Acids. Res. 2004 32: D289-D292.
[Abstract] [FREE Full Text]
Shan Sundararaj, Anchi Guo, Bahram Habibi-Nazhad, Melania Rouani, Paul Stothard, Michael Ellison, and David S. Wishart
The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli
Nucl. Acids. Res. 2004 32: D293-D295.
[Abstract] [FREE Full Text]
Roy R. Chaudhuri, Arshad M. Khan, and Mark J. Pallen
coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics
Nucl. Acids. Res. 2004 32: D296-D299.
[Abstract] [FREE Full Text] [Supplementary Material]
Margrethe H. Serres, Sulip Goswami, and Monica Riley
GenProtEC: an updated and improved analysis of functions of Escherichia coli K-12 proteins
Nucl. Acids. Res. 2004 32: D300-D302.
[Abstract] [FREE Full Text]
Heladia Salgado, Socorro Gama-Castro, Agustino Mart韓ez-Antonio, Edgar D韆z-Peredo, Fabiola S醤chez-Solano, Mart韓 Peralta-Gil, Delfino Garcia-Alonso, Ver髇ica Jim閚ez-Jacinto, Alberto Santos-Zavaleta, C閟ar Bonavides-Mart韓ez, and Julio Collado-Vides
RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12
Nucl. Acids. Res. 2004 32: D303-D306.
[Abstract] [FREE Full Text]
3 2 点赞
