[求助]bioperl的安装问题2！

bioperl模块安装问题之二
摘自 中国Perl协会 用户推广组 xchromosome 2005-12-19 10:38
http://perlchina.sun126.com/cgi-bin/ccb/index.cgi
Microsoft Windows XP [版本 5.1.2600]
(C) 版权所有 1985-2001 Microsoft Corp.

C:\Documents and Settings\xchromosome>cd..

C:\Documents and Settings>cd..

C:\>cd perl

C:\Perl>cd bioperl-1.5.1

C:\Perl\bioperl-1.5.1>perl MaKefile.pl
Generated sub tests. go make show_tests to see available subtests

*** Script Install Section ****

Bioperl comes with a number of useful scripts which you may wish to install.
Install [a]ll Bioperl scripts, [n]one, or choose groups [i]nteractively? [a] a

* Script Directory biblio *
These are scripts to manipulate bibliographic repositories using the
Bio::Biblio modules.
Activating bp_biblio.pl....

* Script Directory Bio-DB-GFF *
These are scripts that go with the Bio::DB::GFF module, a basic
seqfeature database. Install these scripts if you wish to use the
LDAS distributed annotation server or the Generic Genome Browser.

Activating bp_genbank2gff.pl....
Activating bp_bulk_load_gff.pl....
Activating bp_fast_load_gff.pl....
Activating bp_genbank2gff3.pl....
Activating bp_generate_histogram.pl....
Activating bp_load_gff.pl....
Activating bp_meta_gff.pl....
Activating bp_process_gadfly.pl....
Activating bp_process_sgd.pl....
Activating bp_process_wormbase.pl....

* Script Directory biographics *
Activating bp_embl2picture.pl....
Activating bp_glyphs1-demo.pl....
Activating bp_glyphs2-demo.pl....

* Script Directory das *
This directory is currently empty. For the Lightweight Distributed
Annotation System (LDAS) server, see http://www.biodas.org/servers/

* Script Directory DB *
These are scripts to fetch sequence data from local and remote
sequence repositories using the Open Bio Database Access registry
protocol ( http://obda.open-bio.org).
Activating bp_biofetch_genbank_proxy.pl....
Activating bp_bioflat_index.pl....
Activating bp_biogetseq.pl....
Activating bp_flanks.pl....

* Script Directory graphics *
These are scripts to generate graphical images from sequence data.

Activating bp_contig_draw.pl....
Activating bp_feature_draw.pl....
Activating bp_frend.pl....
Activating bp_search_overview.pl....

* Script Directory index *
These are scripts to create and maintain flatfile databases indexed
with the Bio::Index or Bio::DB::Fasta modules.
Activating bp_fetch.pl....
Activating bp_index.pl....
Activating bp_seqret.pl....

* Script Directory popgen *
Activating bp_composite_LD.pl....
Activating bp_heterogeneity_test.pl....

* Script Directory searchio *
These are scripts related to parsing Search Result output like HMMER, FASTA, BLA
ST.
Not all of these scripts use Bioperl objects.
Activating bp_fastam9_to_table.pl....
Activating bp_filter_search.pl....
Activating bp_hmmer_to_table.pl....
Activating bp_search2table.pl....

* Script Directory seq *
These are scripts to interconvert sequence formats and to perform
other common sequence manipulations.
Activating bp_extract_feature_seq.pl....
Activating bp_make_mrna_protein.pl....
Activating bp_seqconvert.pl....
Activating bp_split_seq.pl....
Activating bp_translate_seq.pl....
Activating bp_unflatten_seq.pl....

* Script Directory seqstats *
These are scripts to generate common statistics on protein and
nucleotide sequences.

Activating bp_aacomp.pl....
Activating bp_chaos_plot.pl....
Activating bp_gccalc.pl....
Activating bp_oligo_count.pl....

* Script Directory taxa *
These are scripts to create and query taxonomic trees.
Activating bp_classify_hits_kingdom.pl....
Activating bp_local_taxonomydb_query.pl....
Activating bp_query_entrez_taxa.pl....
Activating bp_taxid4species.pl....

* Script Directory tree *
These are utilities to manipulate and create trees.
Activating bp_blast2tree.pl....
Activating bp_nexus2nh.pl....
Activating bp_tree2pag.pl....

* Script Directory utilities *
These are various sequence-related scripts that were difficult to
classify more specifically but are considered general purpose
utilities.
Activating bp_mrtrans.pl....
Activating bp_nrdb.pl....
Activating bp_sreformat.pl....
Activating bp_dbsplit.pl....
Activating bp_mask_by_search.pl....
Activating bp_mutate.pl....
Activating bp_pairwise_kaks.pl....
Activating bp_remote_blast.pl....
Activating bp_search2alnblocks.pl....
Activating bp_search2BSML.pl....
Activating bp_search2gff.pl....
Activating bp_search2tribe.pl....
Activating bp_seq_length.pl....

External Module XML::SAX, New style SAX parser,
is not installed on this computer.
The Bio::SeqIO::tigrxml,Bio::SeqIO::bsml_sax in Bioperl needs it for Parsers

External Module GD::SVG, Generate optional SVG output,
is not installed on this computer.
The Bio::Graphics::Panel in Bioperl needs it for creating SVG images

External Module Ace, Aceperl,
is not installed on this computer.
The Bio::DB::Ace in Bioperl needs it for access of ACeDB database

External Module IO::Scalar, IO handle to read or write to a scalar,
is not installed on this computer.
The Bio::Tools::Blast::Run::Webblast in Bioperl needs it for remote http Blast
jobs

External Module SVG::Graph, Generate optional SVG output,
is not installed on this computer.
The Bio::TreeIO::svggraph in Bioperl needs it for creating SVG images

External Module XML::SAX::Base, New style SAX parser,
is not installed on this computer.
The Bio::SeqIO::tigrxml,Bio::SeqIO::bsml_sax in Bioperl needs it for Parsers

External Module GD, Graphical Drawing Toolkit,
is not installed on this computer.
The Bio::Graphics in Bioperl needs it for rendering Sequences and Features

External Module XML::Twig, Available on CPAN,
is not installed on this computer.
The Module Bio::Variation::IO::xml.pm in Bioperl needs it for parsing of XML d
ocuments

External Module DB_File, Persistent object storage and retrieval,
is not installed on this computer.
The in Bioperl needs it for Bio::DB::GFF::Adaptor::berkeleydb

External Module SVG, Generate optional SVG output,
is not installed on this computer.
The Bio::Graphics::Pictogram in Bioperl needs it for Bio::Graphics

External Module Text::Shellwords, Execute shell commands,
is not installed on this computer.
The Bio::Graphics in Bioperl needs it for test scripts

External Module XML::Parser::PerlSAX, Parsing of XML documents,
is not installed on this computer.
The Bio::SeqIO::game,Bio::Variation::* in Bioperl needs it for Bio::Variation
code, GAME parser

External Module XML::SAX::Writer, New style SAX parser,
is not installed on this computer.
The Bio::SeqIO::tigrxml,Bio::SeqIO::bsml_sax in Bioperl needs it for Writers

External Module XML::Writer, Parsing + writing of XML documents,
is not installed on this computer.
The Bio::SeqIO::game,Bio::Variation::* in Bioperl needs it for Bio::Variation
code, GAME parser

External Module Clone, Recursively copy Perl datatypes,
is not installed on this computer.
The Bio::Graph::ProteinGraph in Bioperl needs it for cloning ProteinGraph obje
cts

External Module DBD::mysql, Mysql driver,
is not installed on this computer.
The Bio::DB::GFF in Bioperl needs it for loading and querying of Mysql-based G
FF feature databases

External Module Class::AutoClass, Protocol for object creation,
is not installed on this computer.
The Bio::Graph::SimpleGraph in Bioperl needs it for creating objects

External Module Bio::ANS1::EntrezGene, Enztrez Gene Bioperl Parser,
is not installed on this computer.
The Bio::SeqIO::entrezgene in Bioperl needs it for Parsers

External Module Graph::Directed, Generic Graph data structure and algorithms,
is not installed on this computer.
The Bio::Ontology::SimpleOntologyEngine in Bioperl needs it for ontology engin
e implementation for the GO parser

Information:

Some perl modules are missing, listed above. The only
functionality that will be affected is also described above,
the rest of bioperl will work fine.

The installation of these external packages is very simple. You
can read more about bioperl external dependencies in the INSTALL
file or at:

http://bioperl.org/Core/Latest/INSTALL

Enjoy the rest of bioperl, which you can use after going 'make install'

Warning: prerequisite DB_File 0 not found.
Warning: prerequisite IO::Scalar 0 not found.
Writing Makefile for Bio




































































































C:\Perl\bioperl-1.5.1>

问题一:
为什么有的模块不能安装？