R语言 sequenza
想要做肿瘤纯度和倍生计算,sequenza包下载后根据给出的参考代码,R语言一直出错:
data.file <- system.file("extdata", "example.seqz.txt.gz", package = "sequenza")
test <- sequenza.extract(data.file, verbose = FALSE)
Error in (function (x, col_types) : unused argument (parallel = 1)
我看到github论坛(https://github.com/issues/recent?issue=sztup%7CscarHRD%7C29)也有类似的问题,但是我试了他们提供个三种方法,依旧失败:
① Installing from GitHub: devtools::install_github("buschlab/sequenza", build_vignettes = FALSE) (suggested by @nr23730).
② Downgrading the iotools package (suggested by @nr23730).
③ Installing the local patch: devtools::install_local("./sequenza-WortJohn-patch-1.zip", force=TRUE, repos=NULL, type="source", dependencies=FALSE) (suggested by @WortJohn).
我甚至到原代码去删除parallel这个参数,但是还是报错!!求助!!!还有什么办法啊,哭了都

















































